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ICPP
2007
IEEE
15 years 10 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
TCBB
2008
113views more  TCBB 2008»
15 years 3 months ago
Efficient Algorithms for the Computational Design of Optimal Tiling Arrays
The representation of a genome by oligonucleotide probes is a prerequisite for the analysis of many of its basic properties, such as transcription factor binding sites, chromosomal...
Alexander Schliep, Roland Krause
PAMI
2006
141views more  PAMI 2006»
15 years 3 months ago
Diffusion Maps and Coarse-Graining: A Unified Framework for Dimensionality Reduction, Graph Partitioning, and Data Set Parameter
We provide evidence that non-linear dimensionality reduction, clustering and data set parameterization can be solved within one and the same framework. The main idea is to define ...
Stéphane Lafon, Ann B. Lee
STOC
2012
ACM
196views Algorithms» more  STOC 2012»
13 years 6 months ago
Time-space tradeoffs in resolution: superpolynomial lower bounds for superlinear space
We give the first time-space tradeoff lower bounds for Resolution proofs that apply to superlinear space. In particular, we show that there are formulas of size N that have Reso...
Paul Beame, Christopher Beck, Russell Impagliazzo
SSDBM
2009
IEEE
192views Database» more  SSDBM 2009»
15 years 10 months ago
MLR-Index: An Index Structure for Fast and Scalable Similarity Search in High Dimensions
High-dimensional indexing has been very popularly used for performing similarity search over various data types such as multimedia (audio/image/video) databases, document collectio...
Rahul Malik, Sangkyum Kim, Xin Jin, Chandrasekar R...