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» Sublinear Time Algorithms for Metric Space Problems
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DIS
2004
Springer
15 years 9 months ago
Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance
We consider the problem of discovering the optimal pair of substring patterns with bounded distance α, from a given set S of strings. We study two kinds of pattern classes, one is...
Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö,...
RECOMB
2006
Springer
16 years 4 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
HIS
2008
15 years 5 months ago
Hybrid Approach for Machine Scheduling Optimization in Custom Furniture Industry
Machine scheduling is a critical problem in industries where products are custom-designed. The wide range of products, the lack of previous experiences in manufacturing, and the s...
Juan Carlos Vidal, Manuel Mucientes, Alberto Bugar...
SPIRE
2005
Springer
15 years 9 months ago
An Edit Distance Between RNA Stem-Loops
We introduce the notion of conservative edit distance and mapping between two RNA stem-loops. We show that unlike the general edit distance between RNA secondary structures, the co...
Valentin Guignon, Cedric Chauve, Sylvie Hamel
COMGEO
2011
ACM
14 years 11 months ago
Stabbers of line segments in the plane
The problem of computing a representation of the stabbing lines of a set S of segments in the plane was solved by Edelsbrunner et al. We provide efficient algorithms for the follo...
Mercè Claverol, Delia Garijo, Clara I. Grim...