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DIS
2010
Springer
14 years 7 months ago
Sparse Substring Pattern Set Discovery Using Linear Programming Boosting
In this paper, we consider finding a small set of substring patterns which classifies the given documents well. We formulate the problem as 1 norm soft margin optimization problem ...
Kazuaki Kashihara, Kohei Hatano, Hideo Bannai, Mas...
CSB
2003
IEEE
15 years 2 months ago
Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching Statistics
The design of large scale DNA microarrays is a challenging problem. So far, probe selection algorithms must trade the ability to cope with large scale problems for a loss of accur...
Sven Rahmann
MST
2006
149views more  MST 2006»
14 years 9 months ago
Parameterized Intractability of Distinguishing Substring Selection
A central question in computational biology is the design of genetic markers to distinguish between two given sets of (DNA) sequences. This question is formalized as the NP-comple...
Jens Gramm, Jiong Guo, Rolf Niedermeier
FCT
2003
Springer
15 years 2 months ago
On Exact and Approximation Algorithms for Distinguishing Substring Selection
Abstract. The NP-complete Distinguishing Substring Selection problem (DSSS for short) asks, given a set of “good” strings and a set of “bad” strings, for a solution string ...
Jens Gramm, Jiong Guo, Rolf Niedermeier
COMBINATORICS
2004
90views more  COMBINATORICS 2004»
14 years 9 months ago
Strings with Maximally Many Distinct Subsequences and Substrings
A natural problem in extremal combinatorics is to maximize the number of distinct subsequences for any length-n string over a finite alphabet ; this value grows exponentially, but...
Abraham Flaxman, Aram Wettroth Harrow, Gregory B. ...