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ICPP
2006
IEEE
15 years 7 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
VLDB
2001
ACM
115views Database» more  VLDB 2001»
15 years 5 months ago
Dynamic Update Cube for Range-sum Queries
A range-sum query is very popular and becomes important in finding trends and in discovering relationships between attributes in diverse database applications. It sums over the se...
Seok-Ju Chun, Chin-Wan Chung, Ju-Hong Lee, Seok-Ly...
RIDE
2002
IEEE
15 years 6 months ago
Extensible Data Management in the Middle-Tier
Current data management solutions are largely optimized for intra-enterprise, client-server applications. They depend on predictability, predefined structure, and universal admini...
Brian F. Cooper, Neal Sample, Michael J. Franklin,...
BIBE
2007
IEEE
114views Bioinformatics» more  BIBE 2007»
15 years 7 months ago
A Hierarchical Grow-and-Match Algorithm for Backbone Resonance Assignments Given 3D Structure
Abstract—This paper develops an algorithm for NMR backbone resonance assignment given a 3D structure and a set of relatively sparse 15 N-edited NMR data, with the through-space 1...
Fei Xiong, Chris Bailey-Kellogg
KDD
2009
ACM
132views Data Mining» more  KDD 2009»
16 years 1 months ago
Learning patterns in the dynamics of biological networks
Our dynamic graph-based relational mining approach has been developed to learn structural patterns in biological networks as they change over time. The analysis of dynamic network...
Chang Hun You, Lawrence B. Holder, Diane J. Cook