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» Suffix tree construction algorithms on modern hardware
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93
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BMCBI
2008
128views more  BMCBI 2008»
14 years 12 months ago
Efficient computation of absent words in genomic sequences
Background: Analysis of sequence composition is a routine task in genome research. Organisms are characterized by their base composition, dinucleotide relative abundance, codon us...
Julia Herold, Stefan Kurtz, Robert Giegerich
102
Voted
RECOMB
2005
Springer
16 years 1 days ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
JCB
2006
124views more  JCB 2006»
14 years 11 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
DAC
2006
ACM
15 years 3 months ago
Steiner network construction for timing critical nets
Conventionally, signal net routing is almost always implemented as Steiner trees. However, non-tree topology is often superior on timing performance as well as tolerance to open f...
Shiyan Hu, Qiuyang Li, Jiang Hu, Peng Li
DAC
2003
ACM
16 years 21 days ago
Clock-tree power optimization based on RTL clock-gating
As power consumption of the clock tree in modern VLSI designs tends to dominate, measures must be taken to keep it under control. This paper introduces an approach for reducing cl...
Monica Donno, Alessandro Ivaldi, Luca Benini, Enri...