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102
Voted
BMCBI
2008
111views more  BMCBI 2008»
14 years 12 months ago
Information-based methods for predicting gene function from systematic gene knock-downs
Background: The rapid annotation of genes on a genome-wide scale is now possible for several organisms using high-throughput RNA interference assays to knock down the expression o...
Matthew T. Weirauch, Christopher K. Wong, Alexandr...
98
Voted
BMCBI
2008
116views more  BMCBI 2008»
14 years 12 months ago
MScanner: a classifier for retrieving Medline citations
Background: Keyword searching through PubMed and other systems is the standard means of retrieving information from Medline. However, ad-hoc retrieval systems do not meet all of t...
Graham L. Poulter, Daniel L. Rubin, Russ B. Altman...
BMCBI
2008
176views more  BMCBI 2008»
14 years 12 months ago
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
Background: A multiple sequence alignment (MSA) generated for a protein can be used to characterise residues by means of a statistical analysis of single columns. In addition to t...
Rainer Merkl, Matthias Zwick
BMCBI
2004
196views more  BMCBI 2004»
14 years 11 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar
EMNLP
2009
14 years 9 months ago
Parser Adaptation and Projection with Quasi-Synchronous Grammar Features
We connect two scenarios in structured learning: adapting a parser trained on one corpus to another annotation style, and projecting syntactic annotations from one language to ano...
David A. Smith, Jason Eisner