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» Supervised inference of gene-regulatory networks
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NIPS
2004
14 years 11 months ago
Supervised Graph Inference
We formulate the problem of graph inference where part of the graph is known as a supervised learning problem, and propose an algorithm to solve it. The method involves the learni...
Jean-Philippe Vert, Yoshihiro Yamanishi
BMCBI
2010
151views more  BMCBI 2010»
14 years 10 months ago
TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and e
Background: Identification of transcription factors (TFs) involved in a biological process is the first step towards a better understanding of the underlying regulatory mechanisms...
Xiaoqi Cui, Tong Wang, Huann-Sheng Chen, Victor Bu...
KDD
2009
ACM
230views Data Mining» more  KDD 2009»
15 years 2 months ago
Grouped graphical Granger modeling methods for temporal causal modeling
We develop and evaluate an approach to causal modeling based on time series data, collectively referred to as“grouped graphical Granger modeling methods.” Graphical Granger mo...
Aurelie C. Lozano, Naoki Abe, Yan Liu, Saharon Ros...
BMCBI
2007
153views more  BMCBI 2007»
14 years 10 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
CORR
2010
Springer
177views Education» more  CORR 2010»
14 years 10 months ago
Supervised Random Walks: Predicting and Recommending Links in Social Networks
Predicting the occurrence of links is a fundamental problem in networks. In the link prediction problem we are given a snapshot of a network and would like to infer which interact...
Lars Backstrom, Jure Leskovec