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» Support vector machine for functional data classification
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163
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TCBB
2010
80views more  TCBB 2010»
15 years 4 months ago
On the Importance of Comprehensible Classification Models for Protein Function Prediction
—The literature on protein function prediction is currently dominated by works aimed at maximizing predictive accuracy, ignoring the important issues of validation and interpreta...
Alex Alves Freitas, Daniela Wieser, Rolf Apweiler
ICML
2005
IEEE
16 years 7 months ago
Large margin non-linear embedding
It is common in classification methods to first place data in a vector space and then learn decision boundaries. We propose reversing that process: for fixed decision boundaries, ...
Alexander Zien, Joaquin Quiñonero Candela
ICDM
2005
IEEE
126views Data Mining» more  ICDM 2005»
15 years 11 months ago
Text Representation: From Vector to Tensor
In this paper, we propose a text representation model, Tensor Space Model (TSM), which models the text by multilinear algebraic high-order tensor instead of the traditional vector...
Ning Liu, Benyu Zhang, Jun Yan, Zheng Chen, Wenyin...
155
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RECOMB
2004
Springer
16 years 6 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
160
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KDD
2007
ACM
159views Data Mining» more  KDD 2007»
16 years 6 months ago
Local decomposition for rare class analysis
Given its importance, the problem of predicting rare classes in large-scale multi-labeled data sets has attracted great attentions in the literature. However, the rare-class probl...
Junjie Wu, Hui Xiong, Peng Wu, Jian Chen