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» Switching Graphs and Their Complexity
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JMLR
2010
118views more  JMLR 2010»
14 years 11 months ago
Exploiting Within-Clique Factorizations in Junction-Tree Algorithms
It is probably fair to say that exact inference in graphical models is considered a solved problem, at least regarding its computational complexity: it is exponential in the treew...
Julian John McAuley, Tibério S. Caetano
BMCBI
2010
189views more  BMCBI 2010»
15 years 4 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
MICRO
2009
IEEE
132views Hardware» more  MICRO 2009»
15 years 11 months ago
Finding concurrency bugs with context-aware communication graphs
Incorrect thread synchronization often leads to concurrency bugs that manifest nondeterministically and are difficult to detect and fix. Past work on detecting concurrency bugs ...
Brandon Lucia, Luis Ceze
BMCBI
2010
148views more  BMCBI 2010»
15 years 4 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...
TCS
2010
15 years 2 months ago
A polynomial solution to the k-fixed-endpoint path cover problem on proper interval graphs
: We study a variant of the path cover problem, namely, the k-fixed-endpoint path cover problem, or kPC for short. Given a graph G and a subset T of k vertices of V (G), a k-fixe...
Katerina Asdre, Stavros D. Nikolopoulos