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106
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BMCBI
2006
113views more  BMCBI 2006»
15 years 19 days ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
BMCBI
2007
148views more  BMCBI 2007»
15 years 18 days ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
99
Voted
IANDC
2006
121views more  IANDC 2006»
15 years 18 days ago
Comparing operational models of name-passing process calculi
We study three operational models of name-passing process calculi: coalgebras on (pre)sheaves, indexed labelled transition systems, and history dependent automata. The coalgebraic...
Marcelo P. Fiore, Sam Staton
97
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INTERNET
2008
150views more  INTERNET 2008»
15 years 18 days ago
Convenience Over Correctness
ion. First described in RFC 707,1 with implementation approaches and details later provided by Andrew Birrell and Bruce Nelson,2 RPC has influenced distributed systems research and...
Steve Vinoski
JCSS
2008
81views more  JCSS 2008»
15 years 17 days ago
A simulator for adaptive parallel applications
Dynamically allocating computing nodes to parallel applications is a promising technique for improving the utilization of cluster resources. Detailed simulations can help identify...
Basile Schaeli, Sebastian Gerlach, Roger D. Hersch
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