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» Synthetic biology - putting engineering into biology
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TC
2010
14 years 10 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
NAR
2011
267views Computer Vision» more  NAR 2011»
14 years 6 months ago
EcoCyc: a comprehensive database of Escherichia coli biology
EcoCyc (http://EcoCyc.org) is a comprehensive model organism database for Escherichia coli K-12 MG1655. From the scientific literature, EcoCyc captures the functions of individual...
Ingrid M. Keseler, Julio Collado-Vides, Alberto Sa...
DAC
2007
ACM
15 years 3 months ago
Programming Living Cells to Function as Massively Parallel Computers
We have reprogrammed the genomes of living cells to construct massively parallel biological computers capable of processing two-dimensional images at a theoretical resolution of g...
Jeffrey J. Tabor
RECOMB
2008
Springer
16 years 2 days ago
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics
The protein inference problem represents a major challenge in shotgun proteomics. Here we describe a novel Bayesian approach to address this challenge that incorporates the predict...
Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag R...
AIS
2010
Springer
14 years 12 months ago
Anticipation and the artificial: aesthetics, ethics, and synthetic life
If complexity is a necessary but not sufficient premise for the existence and expression of the living, anticipation is the distinguishing characteristic of what is alive. Anticipa...
Mihai Nadin