The effective reverse engineering of biochemical networks is one of the great challenges of systems biology. The contribution of this paper is two-fold: 1) We introduce a new meth...
Tracking of multiple objects in biological image data is a challenging problem due largely to poor imaging conditions and complicated motion scenarios. Existing tracking algorithm...
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
In this paper we introduce a new research effort in making state machines executable. The aim is to specify and implement an execution engine for a language that is as close as po...
Just as electronic systems implement computation in terms of voltage (energy per unit charge), molecular systems compute in terms of chemical concentrations (molecules per unit vo...