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» Synthetic biology - putting engineering into biology
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EVOW
2007
Springer
15 years 6 months ago
Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks
The effective reverse engineering of biochemical networks is one of the great challenges of systems biology. The contribution of this paper is two-fold: 1) We introduce a new meth...
Daniel Marbach, Claudio Mattiussi, Dario Floreano
ISBI
2008
IEEE
16 years 15 days ago
A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering
Tracking of multiple objects in biological image data is a challenging problem due largely to poor imaging conditions and complicated motion scenarios. Existing tracking algorithm...
Ihor Smal, Wiro J. Niessen, Erik H. W. Meijering
BMCBI
2010
172views more  BMCBI 2010»
14 years 12 months ago
Comparison of evolutionary algorithms in gene regulatory network model inference
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
Alina Sîrbu, Heather J. Ruskin, Martin Crane
ASM
2005
ASM
15 years 5 months ago
CoreASM: An Extensible ASM Execution Engine
In this paper we introduce a new research effort in making state machines executable. The aim is to specify and implement an execution engine for a language that is as close as po...
Roozbeh Farahbod, Vincenzo Gervasi, Uwe Gläss...
DAC
2011
ACM
13 years 11 months ago
Synchronous sequential computation with molecular reactions
Just as electronic systems implement computation in terms of voltage (energy per unit charge), molecular systems compute in terms of chemical concentrations (molecules per unit vo...
Hua Jiang, Marc D. Riedel, Keshab K. Parhi