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» Synthetic biology - putting engineering into biology
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BMCBI
2007
179views more  BMCBI 2007»
14 years 12 months ago
Automated smoother for the numerical decoupling of dynamics models
Background: Structure identification of dynamic models for complex biological systems is the cornerstone of their reverse engineering. Biochemical Systems Theory (BST) offers a pa...
Marco Vilela, Carlos Cristiano H. Borges, Susana V...
RECOMB
2006
Springer
16 years 4 days ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...
BMCBI
2010
202views more  BMCBI 2010»
14 years 12 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2007
190views more  BMCBI 2007»
14 years 12 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
SASO
2008
IEEE
15 years 6 months ago
The Meaning of Semiochemicals to the Design of Self-Organizing Systems
In biology, many organisms coordinate their interactions in a self-organizing and emergent way solely by means of indirect communication based on chemical substances. These so-cal...
Holger Kasinger, Bernhard Bauer, Jörg Denzing...