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SIAMAM
2011
14 years 6 months ago
Persistence Results for Chemical Reaction Networks with Time-Dependent Kinetics and No Global Conservation Laws
New checkable criteria for persistence of chemical reaction networks are proposed, which extend and complement existing ones. The new results allow the consideration of reaction ra...
David Angeli, Patrick De Leenheer, Eduardo D. Sont...
TCBB
2011
14 years 6 months ago
Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis
A TOPS diagram is a simplified description of the topology of a protein using a graph where nodes are α-helices and β-strands, and edges correspond to chirality relations and p...
J. Rocha
GECCO
2010
Springer
159views Optimization» more  GECCO 2010»
15 years 4 months ago
Evolution of division of labor in genetically homogenous groups
Within nature, the success of many organisms, including certain species of insects, mammals, slime molds, and bacteria, is attributed to their performance of division of labor, wh...
Heather Goldsby, David B. Knoester, Charles Ofria
TREC
2003
15 years 1 months ago
Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track
The Tarragon Consulting team participated in the primary task of the TREC 2003 Genomics Track. We used a combination of knowledge-engineering and corpus analysis to construct sema...
Richard Tong, John Quackenbush, Mark Snuffin
BMCBI
2010
117views more  BMCBI 2010»
14 years 12 months ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...