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» Systems biology, models, and concurrency
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BMCBI
2010
232views more  BMCBI 2010»
15 years 1 months ago
LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB
Background: Biochemical networks play an essential role in systems biology. Rapidly growing network data and e research activities call for convenient visualization tools to aid i...
Sheng He, Juan Mei, Guiyang Shi, Zhengxiang Wang, ...
FCT
1999
Springer
15 years 5 months ago
Tile Transition Systems as Structured Coalgebras
The aim of this paper is to investigate the relation between two models of concurrent systems: tile rewrite systems and coalgebras. Tiles are rewrite rules with side e ects which a...
Andrea Corradini, Reiko Heckel, Ugo Montanari
CAV
2010
Springer
227views Hardware» more  CAV 2010»
14 years 11 months ago
Breach, A Toolbox for Verification and Parameter Synthesis of Hybrid Systems
We describe Breach, a Matlab toolbox providing a coherent set of simulation-based techniques aimed at the analysis of deterministic models of hybrid dynamical systems. The primary ...
Alexandre Donzé
CMSB
2008
Springer
15 years 3 months ago
Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical Systems
Kinetic models for biochemical systems often comprise a large amount of coupled differential equations with species concentrations varying on different time scales. In this paper w...
Dirk Lebiedz, Dominik Skanda, Marc Fein
IFM
2010
Springer
190views Formal Methods» more  IFM 2010»
15 years 1 days ago
On Model Checking Techniques for Randomized Distributed Systems
Abstract. The automata-based model checking approach for randomized distributed systems relies on an operational interleaving semantics of the system by means of a Markov decision ...
Christel Baier