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» Systems biology, models, and concurrency
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GI
2009
Springer
15 years 6 months ago
Constraint Functional Multicore Programming
: In this paper we present the concurrent constraint functional programming CCFL and an abstract machine for the evaluation of CCFL programs in a multicore environment. The source ...
Petra Hofstedt, Florian Lorenzen
WDAG
2009
Springer
77views Algorithms» more  WDAG 2009»
15 years 8 months ago
Nonblocking Algorithms and Backward Simulation
Abstract. Optimistic and nonblocking concurrent algorithms are increasingly finding their way into practical use; an important example is software transactional memory implementat...
Simon Doherty, Mark Moir
RECOMB
2010
Springer
15 years 8 months ago
Incremental Signaling Pathway Modeling by Data Integration
Constructing quantitative dynamic models of signaling pathways is an important task for computational systems biology. Pathway model construction is often an inherently incremental...
Geoffrey Koh, David Hsu, P. S. Thiagarajan
BMCBI
2010
172views more  BMCBI 2010»
15 years 1 months ago
Comparison of evolutionary algorithms in gene regulatory network model inference
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
Alina Sîrbu, Heather J. Ruskin, Martin Crane
IDA
2009
Springer
14 years 11 months ago
Estimating Hidden Influences in Metabolic and Gene Regulatory Networks
We address the applicability of blind source separation (BSS) methods for the estimation of hidden influences in biological dynamic systems such as metabolic or gene regulatory net...
Florian Blöchl, Fabian J. Theis