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» Systems biology, models, and concurrency
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ISAMI
2010
14 years 11 months ago
Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy
Probabilistic models of languages are fundamental to understand and learn the profile of the subjacent code in order to estimate its entropy, enabling the verification and predicti...
Sérgio A. D. Deusdado, Paulo Carvalho
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
15 years 7 months ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
ICNC
2005
Springer
15 years 7 months ago
Typing Aberrance in Signal Transduction
We have developed a calculus, called Ipi, for describing the aberrance in biological models. Our approach extends the traditional pi calculus to handle aberrant process in the sign...
Min Zhang, Guoqiang Li, Yuxi Fu, Zhizhou Zhang, Li...
EUROCAST
2007
Springer
159views Hardware» more  EUROCAST 2007»
15 years 5 months ago
Ant Colony Optimization for Model Checking
Abstract Model Checking is a well-known and fully automatic technique for checking software properties, usually given as temporal logic formulas on the program variables. Most of m...
Enrique Alba, J. Francisco Chicano
BIOCOMP
2010
14 years 11 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina