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» Systems biology, models, and concurrency
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CEC
2009
IEEE
15 years 8 months ago
Birds on the wall: Distributing a process-oriented simulation
— The CoSMoS project aims to develop reusable tools and techniques for complex systems modelling and simulation. Using process-oriented software design techniques, we have built ...
Adam T. Sampson, John Markus Bjørndalen, Pa...
ECAL
2007
Springer
15 years 7 months ago
A Computational System for Investigating Chemotaxis-Based Cell Aggregation
Abstract. We have developed a software system that simulates chemotaxis-based cell aggregation in 2D. The model implemented within the system consists of such cell behaviors as che...
Manolya Eyiyurekli, Peter I. Lelkes, David E. Bree...
BMCBI
2007
165views more  BMCBI 2007»
15 years 1 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
ENVSOFT
2008
105views more  ENVSOFT 2008»
15 years 29 days ago
Software tools for pre- and post-processing of oceanic regional simulations
ROMSTOOLS, a collection of global data sets and a series of Matlab programs collected in an integrated toolbox, generates the grid, surface forcing, initial condition, open bounda...
Pierrick Penven, Patrick Marchesiello, Laurent Deb...
BMCBI
2010
104views more  BMCBI 2010»
15 years 1 months ago
Formal reasoning on qualitative models of coinfection of HIV and Tuberculosis and HAART therapy
Background: Several diseases, many of which nowadays pandemic, consist of multifactorial pathologies. Paradigmatic examples come from the immune response to pathogens, in which ca...
Anil Sorathiya, Andrea Bracciali, Pietro Liò...