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» Systems biology, models, and concurrency
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VLDB
2002
ACM
156views Database» more  VLDB 2002»
15 years 27 days ago
A Logical Framework for Scheduling Workflows under Resource Allocation Constraints
A workflow consists of a collection of coordinated tasks designed to carry out a welldefined complex process, such as catalog ordering, trip planning, or a business process in an ...
Pinar Senkul, Michael Kifer, Ismail Hakki Toroslu
PLDI
2012
ACM
13 years 3 months ago
Speculative linearizability
Linearizability is a key design methodology for reasoning about tations of concurrent abstract data types in both shared memory and message passing systems. It provides the illusi...
Rachid Guerraoui, Viktor Kuncak, Giuliano Losa
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
15 years 7 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
BMCBI
2010
167views more  BMCBI 2010»
15 years 1 months ago
BisoGenet: a new tool for gene network building, visualization and analysis
Background: The increasing availability and diversity of omics data in the post-genomic era offers new perspectives in most areas of biomedical research. Graph-based biological ne...
Alexander Martin, Maria Elena Ochagavia, Laya C. R...
BMCBI
2005
212views more  BMCBI 2005»
15 years 1 months ago
PAGE: Parametric Analysis of Gene Set Enrichment
Background: Gene set enrichment analysis (GSEA) is a microarray data analysis method that uses predefined gene sets and ranks of genes to identify significant biological changes i...
Seon-Young Kim, David J. Volsky