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» Systems biology, models, and concurrency
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SIGOPS
2008
141views more  SIGOPS 2008»
15 years 1 months ago
Using model checkers in an introductory course on operating systems
During the last three years, we have been experimenting with the use of the Uppaal model checker in an introductory course on operating systems for first-year Computer Science stu...
Roelof Hamberg, Frits W. Vaandrager
CIBCB
2007
IEEE
15 years 8 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
KDD
2009
ACM
219views Data Mining» more  KDD 2009»
16 years 2 months ago
Structured correspondence topic models for mining captioned figures in biological literature
A major source of information (often the most crucial and informative part) in scholarly articles from scientific journals, proceedings and books are the figures that directly pro...
Amr Ahmed, Eric P. Xing, William W. Cohen, Robert ...
SAC
2004
ACM
15 years 7 months ago
Combining analysis and synthesis in a model of a biological cell
for ideas, and then abstract away from these ideas to produce algorithmic processes that can create problem solutions in a bottom-up manner. We have previously described a top-dow...
Ken Webb, Tony White
IS4TH
2003
Springer
15 years 7 months ago
Deformable Tissue Parameterized by Properties of Real Biological Tissue
Realistic mechanical models of biological soft tissues are a key issue to allow the implementation of reliable systems to aid on orthopedic diagnosis and surgery planning. We are w...
Anderson Maciel, Ronan Boulic, Daniel Thalmann