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» Systems biology, models, and concurrency
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TCS
2011
14 years 8 months ago
An algorithmic framework for network reconstruction
Models of biological systems and phenomena are of high scientific interest and practical relevance, but not always easy to obtain due to their inherent complexity. To gain the re...
Markus Durzinsky, Annegret Wagler, Robert Weismant...
FOSSACS
2006
Springer
15 years 5 months ago
Processes for Adhesive Rewriting Systems
Abstract. Rewriting systems over adhesive categories have been recently introduced as a general framework which encompasses several rewriting-based computational formalisms, includ...
Paolo Baldan, Andrea Corradini, Tobias Heindel, Ba...
COORDINATION
2000
Springer
15 years 5 months ago
GCCS: A Graphical Coordination Language for System Specification
Abstract. We present GCCS, a graphical coordination language for hierarchical concurrent systems. GCCS, which is implemented in the Concurrency Factory design environment, represen...
Rance Cleaveland, Xiaoqun Du, Scott A. Smolka
BMCBI
2011
14 years 8 months ago
Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?
Background: Standard graphs, where each edge links two nodes, have been extensively used to represent the connectivity of metabolic networks. It is based on this representation th...
Wanding Zhou, Luay Nakhleh
TVCG
2008
147views more  TVCG 2008»
15 years 1 months ago
Cerebral: Visualizing Multiple Experimental Conditions on a Graph with Biological Context
Systems biologists use interaction graphs to model the behavior of biological systems at the molecular level. In an iterative process, such biologists observe the reactions of livi...
Aaron Barsky, Tamara Munzner, Jennifer L. Gardy, R...