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» TOPDB: topology data bank of transmembrane proteins
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60
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NAR
2008
62views more  NAR 2008»
15 years 11 days ago
TOPDB: topology data bank of transmembrane proteins
Gábor E. Tusnády, Lajos Kalmá...
BMCBI
2006
112views more  BMCBI 2006»
15 years 14 days ago
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Background: Hidden Markov Models (HMMs) have been extensively used in computational molecular biology, for modelling protein and nucleic acid sequences. In many applications, such...
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavro...
125
Voted
BMCBI
2008
147views more  BMCBI 2008»
15 years 16 days ago
Transmembrane helix prediction using amino acid property features and latent semantic analysis
Background: Prediction of transmembrane (TM) helices by statistical methods suffers from lack of sufficient training data. Current best methods use hundreds or even thousands of f...
Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj...
ISMB
1996
15 years 1 months ago
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
For transmembrane proteins experimental determina-tion of three-dimensional structure is problematic. However, membrane proteins have important impact for molecular biology in gen...
Burkhard Rost, Rita Casadio, Piero Fariselli
102
Voted
RECOMB
2001
Springer
16 years 22 days ago
Predicting the beta-helix fold from protein sequence data
A method is presented that uses b-strand interactions to predict the parallel right-handed b-helix super-secondary structural motif in protein sequences. A program called BetaWrap...
Phil Bradley, Lenore Cowen, Matthew Menke, Jonatha...