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CSB
2004
IEEE
15 years 1 months ago
Space-Conserving Optimal DNA-Protein Alignment
DNA-protein alignment algorithms can be used to discover coding sequences in a genomic sequence, if the corresponding protein derivatives are known. They can also be used to ident...
Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaram...
APBC
2004
154views Bioinformatics» more  APBC 2004»
14 years 11 months ago
Dispensation Order Generation for Pyrosequencing
This article describes a dispensation order generation algorithm for genotyping using the Pyrosequencing method. The input template of the algorithm is a slightly restricted regul...
Mats Carlsson, Nicolas Beldiceanu
PSB
2004
14 years 11 months ago
Motif Discovery in Heterogeneous Sequence Data
This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...
AC
2004
Springer
14 years 9 months ago
Shotgun Sequence Assembly
Shotgun sequencing is the most widely used technique for determining the DNA sequence of organisms. It involves breaking up the DNA into many small pieces that can be read by auto...
Mihai Pop
ALIFE
2004
14 years 9 months ago
Evolution of Robustness in Digital Organisms
We study the evolution of robustness in digital organisms adapting to a high mutation rate. As genomes adjust to the harsh mutational environment, the mean effect of single mutatio...
Jeffrey A. Edlund, Christoph Adami