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15 years 1 months ago
Analysis of Gene Expression Microarrays for Phenotype Classification
Several microarray technologies that monitor the level of expression of a large number of genes have recently emerged. Given DNA-microarray data for a set of cells characterized b...
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu
CIKM
2010
Springer
14 years 10 months ago
Regularization and feature selection for networked features
In the standard formalization of supervised learning problems, a datum is represented as a vector of features without prior knowledge about relationships among features. However, ...
Hongliang Fei, Brian Quanz, Jun Huan
107
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SIGIR
2005
ACM
15 years 6 months ago
A database centric view of semantic image annotation and retrieval
We introduce a new model for semantic annotation and retrieval from image databases. The new model is based on a probabilistic formulation that poses annotation and retrieval as c...
Gustavo Carneiro, Nuno Vasconcelos
BMCBI
2008
143views more  BMCBI 2008»
15 years 22 days ago
Automatic detection of exonic splicing enhancers (ESEs) using SVMs
Background: Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for S...
Britta Mersch, Alexander Gepperth, Sándor S...
BMCBI
2006
100views more  BMCBI 2006»
15 years 20 days ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight