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» Technologies for Integrating Biological Data
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TC
2010
14 years 10 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
CIBCB
2007
IEEE
15 years 6 months ago
Motifs and Modules in Fractured Functional Yeast Networks
The integration of diverse data sets into probabilistic functional networks is an active and important area of research in systems biology. In this paper we fracture a previously p...
Jennifer Hallinan, Anil Wipat
BMCBI
2006
195views more  BMCBI 2006»
14 years 12 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
BMCBI
2007
151views more  BMCBI 2007»
14 years 12 months ago
A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microar
Background: The incorporation of prior biological knowledge in the analysis of microarray data has become important in the reconstruction of transcription regulatory networks in a...
Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai
ICIP
2008
IEEE
16 years 1 months ago
Evaluation and benchmark for biological image segmentation
This paper describes ongoing work on creating a benchmarking and validation dataset for biological image segmentation. While the primary target is biological images, we believe th...
Elisa Drelie Gelasca, Jiyun Byun, Boguslaw Obara, ...