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» Test Generation Algorithms Based on Preorder Relations
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CPHYSICS
2006
124views more  CPHYSICS 2006»
15 years 3 months ago
Collision-free spatial hash functions for structural analysis of billion-vertex chemical bond networks
State-of-the-art molecular dynamics (MD) simulations generate massive datasets involving billion-vertex chemical bond networks, which makes data mining based on graph algorithms s...
Cheng Zhang, Bhupesh Bansal, Paulo S. Branicio, Ra...
BMCBI
2010
132views more  BMCBI 2010»
15 years 3 months ago
Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue d
Background: Protein-protein interactions are fundamental for the majority of cellular processes and their study is of enormous biotechnological and therapeutic interest. In recent...
Albert Solernou, Juan Fernández-Recio
BMCBI
2005
152views more  BMCBI 2005»
15 years 3 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
120
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GLOBECOM
2008
IEEE
15 years 9 months ago
Target-Based Power Control for Queueing Systems with Applications to Packet Switches
—Many data center devices, for instance packet switches, can be modeled within the context of resource constrained queueing systems. In this paper, we define a novel algorithm c...
Benjamin Yolken, Dimitrios Tsamis, Nicholas Bambos
ISCA
1994
IEEE
129views Hardware» more  ISCA 1994»
15 years 7 months ago
Impact of Sharing-Based Thread Placement on Multithreaded Architectures
Multithreaded architectures context switch between instruction streams to hide memory access latency. Although this improves processor utilization, it can increase cache interfere...
Radhika Thekkath, Susan J. Eggers