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WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 4 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
88
Voted
SDM
2010
SIAM
259views Data Mining» more  SDM 2010»
15 years 14 days ago
Semi-supervised Bio-named Entity Recognition with Word-Codebook Learning
We describe a novel semi-supervised method called WordCodebook Learning (WCL), and apply it to the task of bionamed entity recognition (bioNER). Typical bioNER systems can be seen...
Pavel P. Kuksa, Yanjun Qi
BMCBI
2008
155views more  BMCBI 2008»
14 years 11 months ago
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Background: Once a new genome is sequenced, one of the important questions is to determine the presence and absence of biological pathways. Analysis of biological pathways in a ge...
Kwangmin Choi, Sun Kim
BMCBI
2007
111views more  BMCBI 2007»
14 years 11 months ago
Modular co-evolution of metabolic networks
Background: The architecture of biological networks has been reported to exhibit high level of modularity, and to some extent, topological modules of networks overlap with known f...
Jing Zhao, Guohui Ding, Lin Tao, Hong Yu, Zhong-Ha...
BMCBI
2008
112views more  BMCBI 2008»
14 years 11 months ago
Evaluation of genomic island predictors using a comparative genomics approach
Background: Genomic islands (GIs) are clusters of genes in prokaryotic genomes of probable horizontal origin. GIs are disproportionately associated with microbial adaptations of m...
Morgan G. I. Langille, William W. L. Hsiao, Fiona ...