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» Tests for gene clustering
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DILS
2008
Springer
15 years 2 months ago
Semi Supervised Spectral Clustering for Regulatory Module Discovery
We propose a novel semi-supervised clustering method for the task of gene regulatory module discovery. The technique uses data on dna binding as prior knowledge to guide the proces...
Alok Mishra, Duncan Gillies
PR
2006
119views more  PR 2006»
15 years 16 days ago
Fuzzy Bayesian validation for cluster analysis of yeast cell-cycle data
Clustering for the analysis of the genes organizes the patterns into groups by the similarity of the dataset and has been used for identifying the functions of the genes in the cl...
Sung-Bae Cho, Si-Ho Yoo
109
Voted
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
15 years 2 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
107
Voted
BMCBI
2005
98views more  BMCBI 2005»
15 years 15 days ago
The effects of normalization on the correlation structure of microarray data
Background: Stochastic dependence between gene expression levels in microarray data is of critical importance for the methods of statistical inference that resort to pooling test-...
Xing Qiu, Andrew I. Brooks, Lev Klebanov, Andrei Y...
BMCBI
2005
148views more  BMCBI 2005»
15 years 15 days ago
Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments
Background: Numerous nonparametric approaches have been proposed in literature to detect differential gene expression in the setting of two user-defined groups. However, there is ...
Xin Gao, Peter X. K. Song