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154
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BMCBI
2010
104views more  BMCBI 2010»
14 years 7 months ago
A systematic study of genome context methods: calibration, normalization and combination
Background: Genome context methods have been introduced in the last decade as automatic methods to predict functional relatedness between genes in a target genome using the patter...
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
95
Voted
BMCBI
2008
97views more  BMCBI 2008»
15 years 25 days ago
A Population Proportion approach for ranking differentially expressed genes
Background: DNA microarrays are used to investigate differences in gene expression between two or more classes of samples. Most currently used approaches compare mean expression l...
Mugdha Gadgil
122
Voted
ICASSP
2011
IEEE
14 years 4 months ago
A mutual information based approach for evaluating the quality of clustering
In this paper, a new method for evaluating the quality of clustering of genes is proposed based on mutual information criterion. Instead of using the conventional histogram-based ...
Shaikh Anowarul Fattah, Chia-Chun Lin, Sun-Yuan Ku...
90
Voted
BIOSYSTEMS
2008
75views more  BIOSYSTEMS 2008»
15 years 25 days ago
Using matrix of thresholding partial correlation coefficients to infer regulatory network
DNA arrays measure the expression levels for thousands of genes simultaneously under different conditions. These measurements reflect many aspects of the underlying biological pro...
Lide Han, Jun Zhu
IV
2009
IEEE
155views Visualization» more  IV 2009»
15 years 7 months ago
Visualizing Temporal Dynamics at the Genomic and Metabolic Level
We present an application for integrated visualization of gene expression data from time series experiments in gene regulation networks and metabolic networks. Such integration is...
Romain Bourqui, Michel A. Westenberg