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BIBE
2008
IEEE
272views Bioinformatics» more  BIBE 2008»
15 years 9 months ago
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uniï...
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara
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CISIS
2008
IEEE
15 years 9 months ago
Adaptive Computational Chemotaxis in Bacterial Foraging Algorithm
Some researchers have illustrated how individual and groups of bacteria forage for nutrients and to model it as a distributed optimization process, which is called the Bacterial F...
Sambarta Dasgupta, Arijit Biswas, Ajith Abraham, S...
IPPS
2008
IEEE
15 years 9 months ago
Parallelized preprocessing algorithms for high-density oligonucleotide arrays
Studies of gene expression using high-density oligonucleotide microarrays have become standard in a variety of biological contexts. The data recorded using the microarray techniqu...
Markus Schmidberger, Ulrich Mansmann
ICC
2007
IEEE
137views Communications» more  ICC 2007»
15 years 9 months ago
A Novel Algorithm and Architecture for High Speed Pattern Matching in Resource-Limited Silicon Solution
— Network Intrusion Detection Systems (NIDS) are more and more important for identifying and preventing the malicious attacks over the network. This paper proposes a novel cost-e...
Nen-Fu Huang, Yen-Ming Chu, Chi-Hung Tsai, Chen-Yi...
ESTIMEDIA
2005
Springer
15 years 8 months ago
Custom Processor Design Using NISC: A Case-Study on DCT algorithm
Designing Application-Specific Instruction-set Processors (ASIPs) usually requires designing a custom datapath, and modifying instruction-set, instruction decoder, and compiler. A...
Bita Gorjiara, Daniel D. Gajski