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» The BioASP Library: ASP Solutions for Systems Biology
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ICTAI
2010
IEEE
13 years 23 days ago
The BioASP Library: ASP Solutions for Systems Biology
Abstract--Today's molecular biology is confronted with enormous amounts of data, generated by new high-throughput technologies, along with an increasing number of biological m...
Martin Gebser, Arne König, Torsten Schaub, Sv...
GECCO
2005
Springer
193views Optimization» more  GECCO 2005»
13 years 8 months ago
On the contribution of gene libraries to artificial immune systems
Gene libraries have been added to Artificial Immune Systems in analogy to biological immune systems, but to date no careful study of their effect has been made. This work investig...
Peter Spellward, Tim Kovacs
BMCBI
2010
162views more  BMCBI 2010»
13 years 2 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
13 years 8 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
BMCBI
2007
155views more  BMCBI 2007»
13 years 2 months ago
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
Background: In the last decade, techniques were established for the large scale genome-wide analysis of proteins, RNA, and metabolites, and database solutions have been developed ...
Jan Hummel, Michaela Niemann, Stefanie Wienkoop, W...