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BMCBI
2008
109views more  BMCBI 2008»
14 years 10 months ago
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Background: Transposable elements are abundant in eukaryotic genomes and it is believed that they have a significant impact on the evolution of gene and chromosome structure. Whil...
David Ellinghaus, Stefan Kurtz, Ute Willhoeft
BMCBI
2010
131views more  BMCBI 2010»
14 years 10 months ago
FACT: Functional annotation transfer between proteins with similar feature architectures
Background: The increasing number of sequenced genomes provides the basis for exploring the genetic and functional diversity within the tree of life. Only a tiny fraction of the e...
Tina Koestler, Arndt von Haeseler, Ingo Ebersberge...
WEBI
2004
Springer
15 years 3 months ago
Empowering Resource Providers to Build the Semantic Grid
The future success of Grid-enabled e-Science depends on the availability of semantic/knowledge-rich resources on the Grid, i.e., the so-called semantic Grid. This requires not onl...
Liming Chen, Simon J. Cox, Feng Tao, Nigel R. Shad...
BMCBI
2007
152views more  BMCBI 2007»
14 years 10 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
ECOOP
2009
Springer
15 years 10 months ago
Implicit Dynamic Frames: Combining Dynamic Frames and Separation Logic
The dynamic frames approach has proven to be a powerful formalism for specifying and verifying object-oriented programs. However, it requires writing and checking many frame annota...
Jan Smans, Bart Jacobs 0002, Frank Piessens