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BMCBI
2008
115views more  BMCBI 2008»
14 years 12 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
NAR
2010
148views more  NAR 2010»
14 years 6 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...
BMCBI
2005
155views more  BMCBI 2005»
14 years 11 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley
ICDT
2010
ACM
211views Database» more  ICDT 2010»
15 years 9 months ago
Probabilistic Data Exchange
The work reported here lays the foundations of data exchange in the presence of probabilistic data. This requires rethinking the very basic concepts of traditional data exchange, ...
Ronald Fagin, Benny Kimelfeld, Phokion Kolaitis
SIGSOFT
2010
ACM
14 years 9 months ago
Software is data too
Software systems are designed and engineered to process data. However, software is data too. The size and variety of today's software artifacts and the multitude of stakehold...
Andrian Marcus, Tim Menzies