Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
The work reported here lays the foundations of data exchange in the presence of probabilistic data. This requires rethinking the very basic concepts of traditional data exchange, ...
Software systems are designed and engineered to process data. However, software is data too. The size and variety of today's software artifacts and the multitude of stakehold...