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» The Equivalence between Biology and Computation
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123
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RECOMB
2007
Springer
16 years 1 months ago
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
Rohit Singh, Jinbo Xu, Bonnie Berger
117
Voted
WWW
2007
ACM
16 years 1 months ago
BOWiki - a Collaborative Annotation and Ontology Curation Framework
As the amount of data being generated in biology has increased, a major challenge has been how to store and represent this data in a way that makes it easily accessible to researc...
Michael Backhaus, Janet Kelso, Joshua Bacher, Hein...
BMCBI
2004
150views more  BMCBI 2004»
15 years 20 days ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
BMCBI
2006
157views more  BMCBI 2006»
15 years 26 days ago
Determination of the minimum number of microarray experiments for discovery of gene expression patterns
Background: One type of DNA microarray experiment is discovery of gene expression patterns for a cell line undergoing a biological process over a series of time points. Two import...
Fang-Xiang Wu, W. J. Zhang, Anthony J. Kusalik
EMMCVPR
2007
Springer
15 years 4 months ago
Efficient Shape Matching Via Graph Cuts
Abstract. Meaningful notions of distance between planar shapes typically involve the computation of a correspondence between points on one shape and points on the other. To determi...
Frank R. Schmidt, Eno Töppe, Daniel Cremers, ...