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» The Equivalence between Biology and Computation
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SIGPRO
2011
209views Hardware» more  SIGPRO 2011»
14 years 7 months ago
Surveying and comparing simultaneous sparse approximation (or group-lasso) algorithms
In this paper, we survey and compare different algorithms that, given an overcomplete dictionary of elementary functions, solve the problem of simultaneous sparse signal approxim...
A. Rakotomamonjy
77
Voted
RECOMB
2008
Springer
16 years 1 months ago
Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast
Protein interactions and complexes are major components of biological systems. Recent genome-wide applications of tandem affinity purification (TAP) in yeast have increased signifi...
Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer
99
Voted
RECOMB
2005
Springer
16 years 1 months ago
Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
Background: Correlations between polymorphic markers and observed phenotypes provide the basis for mapping traits in quantitative genetics. When the phenotype is gene expression, ...
David Kulp, Manjunatha Jagalur
RECOMB
2003
Springer
16 years 1 months ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
147
Voted
ISMB
2008
15 years 3 months ago
Classification of arrayCGH data using fused SVM
Motivation: Array-based comparative genomic hybridization (arrayCGH) has recently become a popular tool to identify DNA copy number variations along the genome. These profiles are...
Franck Rapaport, Emmanuel Barillot, Jean-Philippe ...