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» The Equivalence between Biology and Computation
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ISMB
1996
15 years 2 months ago
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
For transmembrane proteins experimental determina-tion of three-dimensional structure is problematic. However, membrane proteins have important impact for molecular biology in gen...
Burkhard Rost, Rita Casadio, Piero Fariselli
ISMB
1993
15 years 2 months ago
Detection of Correlations in tRNA Sequences with Structural Implications
Using a flexible representation of biological sequences, we have performed a comparative analysis of 1208 known tRNA sequences. We believe we our technique is a more sensitive met...
Tod M. Klingler, Douglas L. Brutlag
BMCBI
2008
77views more  BMCBI 2008»
15 years 1 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...
CIKM
2010
Springer
14 years 11 months ago
Fast and accurate estimation of shortest paths in large graphs
Computing shortest paths between two given nodes is a fundamental operation over graphs, but known to be nontrivial over large disk-resident instances of graph data. While a numbe...
Andrey Gubichev, Srikanta J. Bedathur, Stephan Seu...
FORTE
2008
15 years 2 months ago
Distributed Semantics and Implementation for Systems with Interaction and Priority
The paper studies a distributed implementation method for the BIP (Behavior, Interaction, Priority) component framework for modeling heterogeneous systems. BIP offers two powerful ...
Ananda Basu, Philippe Bidinger, Marius Bozga, Jose...