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» The Equivalence between Biology and Computation
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CIBCB
2007
IEEE
15 years 6 months ago
A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins
Abstract— We applied Support Vector Machines to the prediction of the subcellular localization of transmembrane proteins, and compared the performance of different sequence kerne...
Stefan Maetschke, Marcus Gallagher, Mikael Bod&eac...
CIBCB
2006
IEEE
15 years 6 months ago
Optimization of the Sliding Window Size for Protein Structure Prediction
- Sliding window based methods are relatively often applied in prediction of various aspects related to protein structure. Despite their wide spread use, researchers did not establ...
Ke Chen, Lukasz A. Kurgan, Jishou Ruan
SC
2003
ACM
15 years 5 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
FCT
2003
Springer
15 years 5 months ago
On Exact and Approximation Algorithms for Distinguishing Substring Selection
Abstract. The NP-complete Distinguishing Substring Selection problem (DSSS for short) asks, given a set of “good” strings and a set of “bad” strings, for a solution string ...
Jens Gramm, Jiong Guo, Rolf Niedermeier
IRREGULAR
1997
Springer
15 years 4 months ago
Parallel Shared-Memory State-Space Exploration in Stochastic Modeling
Stochastic modeling forms the basis for analysis in many areas, including biological and economic systems, as well as the performance and reliability modeling of computers and comm...
Susann C. Allmaier, Graham Horton