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» The Equivalence between Biology and Computation
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PSB
2003
15 years 1 months ago
MAP: Searching Large Genome Databases
A number of biological applications require comparison of large genome strings. Current techniques suffer from both disk I/O and computational cost because of extensive memory req...
Tamer Kahveci, Ambuj K. Singh
GECCO
2008
Springer
174views Optimization» more  GECCO 2008»
15 years 28 days ago
Mask functions for the symbolic modeling of epistasis using genetic programming
The study of common, complex multifactorial diseases in genetic epidemiology is complicated by nonlinearity in the genotype-to-phenotype mapping relationship that is due, in part,...
Ryan J. Urbanowicz, Nate Barney, Bill C. White, Ja...
CORR
2007
Springer
127views Education» more  CORR 2007»
14 years 11 months ago
Attribute Exploration of Discrete Temporal Transitions
Discrete temporal transitions occur in a variety of domains, but this work is mainly motivated by applications in molecular biology: explaining and analyzing observed transcriptome...
Johannes Wollbold
JCB
2007
108views more  JCB 2007»
14 years 11 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
BC
2004
97views more  BC 2004»
14 years 11 months ago
An elaborated model of fly small-target tracking
Flies have the capability to visually track small moving targets, even across cluttered backgrounds. Previous computational models, based on figure detection (FD) cells identified ...
Charles M. Higgins, Vivek Pant