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» The Equivalence between Biology and Computation
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BMCBI
2010
151views more  BMCBI 2010»
14 years 12 months ago
Using diffusion distances for flexible molecular shape comparison
Background: Many molecules are flexible and undergo significant shape deformation as part of their function, and yet most existing molecular shape comparison (MSC) methods treat t...
Yu-Shen Liu, Qi Li, Guo-Qin Zheng, Karthik Ramani,...
BMCBI
2008
99views more  BMCBI 2008»
14 years 12 months ago
Multiple organism algorithm for finding ultraconserved elements
Background: Ultraconserved elements are nucleotide or protein sequences with 100% identity (no mismatches, insertions, or deletions) in the same organism or between two or more or...
Scott Christley, Neil F. Lobo, Gregory R. Madey
BMCBI
2006
130views more  BMCBI 2006»
14 years 12 months ago
Docking protein domains in contact space
Background: Many biological processes involve the physical interaction between protein domains. Understanding these functional associations requires knowledge of the molecular str...
Stefano Lise, Alice Walker-Taylor, David T. Jones
BMCBI
2007
132views more  BMCBI 2007»
14 years 12 months ago
Dependence of paracentric inversion rate on tract length
Background: We develop a Bayesian method based on MCMC for estimating the relative rates of pericentric and paracentric inversions from marker data from two species. The method al...
Thomas L. York, Richard Durrett, Rasmus Nielsen
MOBISYS
2007
ACM
15 years 11 months ago
MobiSteer: using steerable beam directional antenna for vehicular network access
In this work, we investigate the use of directional antennas and beam steering techniques to improve performance of 802.11 links in the context of communication between a moving v...
Vishnu Navda, Anand Prabhu Subramanian, Kannan Dha...