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» The Equivalence between Biology and Computation
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121
Voted
BMCBI
2006
143views more  BMCBI 2006»
15 years 21 days ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...
112
Voted
JCB
2006
115views more  JCB 2006»
15 years 19 days ago
Designing an A* Algorithm for Calculating Edit Distance between Rooted-Unordered Trees
Tree structures are useful for describing and analyzing biological objects and processes. Consequently, there is a need to design metrics and algorithms to compare trees. A natura...
Yair Horesh, Ramit Mehr, Ron Unger
97
Voted
BMCBI
2010
193views more  BMCBI 2010»
15 years 23 days ago
Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
Background: Affymetrix GeneChip microarrays are popular platforms for expression profiling in two types of studies: detection of differential expression computed by p-values of t-...
Jakub Mieczkowski, Magdalena E. Tyburczy, Michal D...
NC
2006
130views Neural Networks» more  NC 2006»
15 years 18 days ago
Dynamic self-assembly in living systems as computation
Biochemical reactions taking place in living systems that map different inputs to specific outputs are intuitively recognized as performing information processing. Conventional wis...
Ann M. Bouchard, Gordon C. Osbourn
SHAPE
1999
Springer
15 years 4 months ago
Order Structure, Correspondence, and Shape Based Categories
Abstract. We propose a general method for finding pointwise correspondence between 2-D shapes based on the concept of order structure and using geometric hashing. The problem of ...
Stefan Carlsson