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» The Equivalence between Biology and Computation
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ANOR
2010
139views more  ANOR 2010»
14 years 11 months ago
Some operations research methods for analyzing protein sequences and structures
Operations Research is probably one of the most successful fields of applied mathematics used in Economics, Physics, Chemistry, almost everywhere onehastoanalyzehugeamountsofdata.L...
Piotr Lukasiak, Jacek Blazewicz, Maciej Milostan
117
Voted
BMCBI
2010
178views more  BMCBI 2010»
15 years 24 days ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader
91
Voted
BMCBI
2006
102views more  BMCBI 2006»
15 years 22 days ago
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
Background: A key post genomics challenge is to identify how genes in an organism come together and perform physiological functions. An important first step in this direction is t...
Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan
98
Voted
BMCBI
2006
109views more  BMCBI 2006»
15 years 22 days ago
A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions
Background: Phytochromes are photoreceptors, discovered in plants, that control a wide variety of developmental processes. They have also been found in bacteria and fungi, but for...
Tilman Lamparter
CORR
2006
Springer
144views Education» more  CORR 2006»
15 years 22 days ago
On the logical definability of certain graph and poset languages
We show that it is equivalent, for certain sets of finite graphs, to be definable in CMS (counting monadic second-order, a natural extension of monoadic second-order logic), and t...
Pascal Weil