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» The Equivalence between Biology and Computation
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ECOOPW
1997
Springer
15 years 4 months ago
Active Software Artifacts
There are many similarities between industrial goods manufacturing and software development processes. This paper first briefly analyzes the recent developments in goods manufactur...
Mehmet Aksit, Francesco Marcelloni, Bedir Tekinerd...
GD
2006
Springer
15 years 4 months ago
Morphing Planar Graphs in Spherical Space
We consider the problem of intersection-free planar graph morphing, and in particular, a generalization from Euclidean space to spherical space. We show that there exists a continu...
Stephen G. Kobourov, Matthew Landis
103
Voted
IFIP
2004
Springer
15 years 6 months ago
Imperfectness of Data for STS-Based Physical Mapping
In the STS-based mapping, we are requested to obtain the correct order of probes in a DNA sequence from a given set of fragments or equivalently a hybridization matrix A. It is wel...
Hiro Ito, Kazuo Iwama, Takeyuki Tamura
118
Voted
RECOMB
2005
Springer
16 years 1 months ago
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Many important cellular response mechanisms are activated when a peptide binds to an appropriate receptor. In the immune system, the recognition of pathogen peptides begins when th...
Chen Yanover, Tomer Hertz
RECOMB
2003
Springer
16 years 1 months ago
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
We propose a framework for modeling sequence motifs based on the maximum entropy principle (MEP). We recommend approximating short sequence motif distributions with the maximum en...
Gene W. Yeo, Christopher B. Burge