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» The Equivalence between Biology and Computation
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CIKM
2005
Springer
15 years 6 months ago
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
Many bioinformatics applications would benefit from comparing proteins based on their biological role rather than their sequence. In most biological databases, proteins are alrea...
Francisco M. Couto, Mário J. Silva, Pedro C...
ALIFE
2006
15 years 23 days ago
Understanding Linguistic Evolution by Visualizing the Emergence of Topographic Mappings
We show how cultural selection for learnability during the process of linguistic evolution can be visualized using a simple iterated learning model. Computational models of linguis...
Henry Brighton, Simon Kirby
124
Voted
MOC
2011
14 years 7 months ago
Computing systems of Hecke eigenvalues associated to Hilbert modular forms
We utilize effective algorithms for computing in the cohomology of a Shimura curve together with the Jacquet-Langlands correspondence to compute systems of Hecke eigenvalues assoc...
Matthew Greenberg, John Voight
126
Voted
RECOMB
1999
Springer
15 years 5 months ago
Fast detection of common geometric substructure in proteins
We consider the problem of identifying common three-dimensional substructures between proteins. Our method is based on comparing the shape of the α-carbon backbone structures of ...
L. Paul Chew, Daniel P. Huttenlocher, Klara Kedem,...
RECOMB
2003
Springer
16 years 1 months ago
Modeling dependencies in protein-DNA binding sites
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...