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» The Equivalence between Biology and Computation
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BICOB
2009
Springer
15 years 7 months ago
Graph Spectral Approach for Identifying Protein Domains
Here we present a simple method based on graph spectral properties to automatically partition multi-domain proteins into individual domains. The identification of structural domain...
Hari Krishna Yalamanchili, Nita Parekh
111
Voted
RECOMB
2005
Springer
15 years 6 months ago
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels
Phenotypic differences between closely-related species may arise from differential expression regimes, rather than different gene complements. Knowledge of cellular protein levels ...
Orna Man, Joel L. Sussman, Yitzhak Pilpel
128
Voted
RECOMB
1999
Springer
15 years 5 months ago
Evolution of metabolisms: a new method for the comparison of metabolic pathways
The abundance of information provided by completely sequenced genomes de nes a starting point for new insights in the multilevel organization of organisms and their evolution. At ...
Christian V. Forst, Klaus Schulten
ASM
2010
ASM
15 years 4 months ago
Starting B Specifications from Use Cases
The B method is one of the most used formal methods, when reactive systems is under question, due to good support for refinement. However, obtaining the formal model from requireme...
Thiago C. de Sousa, Aryldo G. Russo
ISMB
1997
15 years 2 months ago
Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations
The structural comparison of proteins has become increasingly important as a means to identify protein motifs and fold families. In this paper we present a new algorithm for the c...
Amit Pal Singh, Douglas L. Brutlag