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» The Equivalence between Biology and Computation
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RECOMB
2005
Springer
16 years 1 months ago
Using Multiple Alignments to Improve Gene Prediction
The multiple species de novo gene prediction problem can be stated as follows: given an alignment of genomic sequences from two or more organisms, predict the location and structur...
Samuel S. Gross, Michael R. Brent
92
Voted
ISMB
2000
15 years 2 months ago
Prediction of the Number of Residue Contacts in Proteins
Knowing the number of residue contacts in a protein is crucial for deriving constraints useful in modeling protein folding, protein structure, and/or scoring remote homology searc...
Piero Fariselli, Rita Casadio
115
Voted
RECOMB
2010
Springer
14 years 11 months ago
Scaffold Filling under the Breakpoint Distance
Motivated by the trend of genome sequencing without completing the sequence of the whole genomes, Mu˜noz et al. recently studied the problem of filling an incomplete multichromos...
Haitao Jiang, Chunfang Zheng, David Sankoff, Binha...
RECOMB
2010
Springer
14 years 10 months ago
Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives
In comparative genomics studies, finding a minimum length sequences of reversals, so called sorting by reversals, has been the topic of a huge literature. Since there are many mini...
Ghada Badr, Krister M. Swenson, David Sankoff
94
Voted
TCSV
2010
14 years 7 months ago
Motion Refinement Based Progressive Side-Information Estimation for Wyner-Ziv Video Coding
During the past ten years, Wyner-Ziv video coding (WZVC) has gained a lot of research interests because of its unique characteristics of "simple encoding, complex decoding&quo...
Wei Liu, Lina Dong, Wenjun Zeng