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» The GREC Challenges 2010: Overview and Evaluation Results
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BMCBI
2010
139views more  BMCBI 2010»
15 years 2 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
BMCBI
2010
98views more  BMCBI 2010»
15 years 2 months ago
Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents
Background: Drug-drug interactions are frequently reported in the increasing amount of biomedical literature. Information Extraction (IE) techniques have been devised as a useful ...
Isabel Segura-Bedmar, Mario Crespo, César d...
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BMCBI
2010
70views more  BMCBI 2010»
15 years 2 months ago
The Text-mining based PubChem Bioassay neighboring analysis
Background: In recent years, the number of High Throughput Screening (HTS) assays deposited in PubChem has grown quickly. As a result, the volume of both the structured informatio...
Lianyi Han, Tugba O. Suzek, Yanli Wang, Steve H. B...
ICFP
2010
ACM
15 years 2 months ago
Bidirectionalizing graph transformations
Bidirectional transformations provide a novel mechanism for synchronizing and maintaining the consistency of information between input and output. Despite many promising results o...
Soichiro Hidaka, Zhenjiang Hu, Kazuhiro Inaba, Hir...
BMCBI
2010
150views more  BMCBI 2010»
15 years 2 months ago
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
Background: The reconstruction of protein complexes from the physical interactome of organisms serves as a building block towards understanding the higher level organization of th...
Sriganesh Srihari, Kang Ning, Hon Wai Leong