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» The Gene Ontology project in 2008
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BMCBI
2005
179views more  BMCBI 2005»
14 years 9 months ago
MARS: Microarray analysis, retrieval, and storage system
Background: Microarray analysis has become a widely used technique for the study of geneexpression patterns on a genomic scale. As more and more laboratories are adopting microarr...
Michael Maurer, Robert Molidor, Alexander Sturn, J...
RECOMB
2008
Springer
15 years 10 months ago
Accounting for Non-genetic Factors Improves the Power of eQTL Studies
Abstract. The recent availability of large scale data sets profiling single nucleotide polymorphisms (SNPs) and gene expression across different human populations, has directed muc...
Oliver Stegle, Anitha Kannan, Richard Durbin, John...
BMCBI
2008
158views more  BMCBI 2008»
14 years 9 months ago
Metrics for GO based protein semantic similarity: a systematic evaluation
Background: Several semantic similarity measures have been applied to gene products annotated with Gene Ontology terms, providing a basis for their functional comparison. However,...
Catia Pesquita, Daniel Faria, Hugo P. Bastos, Ant&...
WONTO
2008
14 years 11 months ago
SCOP: a Java Framework for Building Semantic Virtual Communities in the Web
This paper describes the development of a framework to build Virtual Communities of Practice in the web. It is part of a larger project named as DWeb (acronym for Dream Web). The p...
Marcio Balian, Cedric Luiz de Carvalho
BMCBI
2008
141views more  BMCBI 2008»
14 years 9 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...