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» The Gene Ontology project in 2008
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BMCBI
2008
128views more  BMCBI 2008»
14 years 9 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
BMCBI
2004
124views more  BMCBI 2004»
14 years 9 months ago
The Molecular Pages of the mesotelencephalic dopamine consortium (DopaNet)
Background: DopaNet http://www.dopanet.org is a Systems Biology initiative that aims to investigate precisely and quantitatively all the aspects of neurotransmission in a specific...
Nicolas Le Novère, Marco Donizelli
73
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BMCBI
2008
106views more  BMCBI 2008»
14 years 9 months ago
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi,
Background: Over 60% of protein-coding genes in vertebrates express mRNAs that undergo alternative splicing. The resulting collection of transcript isoforms poses significant chal...
Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen,...
TREC
2003
14 years 11 months ago
BioText Team Report for the TREC 2003 Genomics Track
The BioText project team participated in both tasks of the TREC 2003 genomics track. Key to our approach in the primary task was the use of an organism-name recognition module, a ...
Gaurav Bhalotia, Preslav Nakov, Ariel S. Schwartz,...
TREC
2007
14 years 10 months ago
Entity-Based Relevance Feedback for Genomic List Answer Retrieval
In this paper we present a system which uses ontological resources and a gene name variation generation tool to expand concepts in the original query. The novelty of our approach ...
Nicola Stokes, Yi Li, Lawrence Cavedon, Eric Huang...