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BMCBI
2010
183views more  BMCBI 2010»
14 years 9 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
BMCBI
2010
156views more  BMCBI 2010»
14 years 9 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
BMCBI
2008
130views more  BMCBI 2008»
14 years 9 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
CORR
2010
Springer
77views Education» more  CORR 2010»
14 years 9 months ago
Stochastic Analysis of Non-slotted Aloha in Wireless Ad-Hoc Networks
: In this paper we propose two analytically tractable stochastic models of non-slotted Aloha for Mobile Ad-hoc NETworks (MANETs): one model assumes a static pattern of nodes while ...
Bartek Blaszczyszyn, Paul Mühlethaler
CORR
2010
Springer
249views Education» more  CORR 2010»
14 years 9 months ago
Lower Bounds on Near Neighbor Search via Metric Expansion
In this paper we show how the complexity of performing nearest neighbor (NNS) search on a metric space is related to the expansion of the metric space. Given a metric space we loo...
Rina Panigrahy, Kunal Talwar, Udi Wieder