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BMCBI
2010
201views more  BMCBI 2010»
14 years 11 months ago
Analysis of X-ray Structures of Matrix Metalloproteinases via Chaotic Map Clustering
Background: Matrix metalloproteinases (MMPs) are well-known biological targets implicated in tumour progression, homeostatic regulation, innate immunity, impaired delivery of pro-...
Ilenia Giangreco, Orazio Nicolotti, Angelo Carotti...
BMCBI
2010
178views more  BMCBI 2010»
14 years 11 months ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader
JCC
2006
110views more  JCC 2006»
14 years 11 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs
NAR
2011
199views Computer Vision» more  NAR 2011»
14 years 2 months ago
FragmentStore - a comprehensive database of fragments linking metabolites, toxic molecules and drugs
Consideration of biomolecules in terms of their molecular building blocks provides valuable new information regarding their synthesis, degradation and similarity. Here, we present...
Jessica Ahmed, Catherine L. Worth, Paul Florian Th...
IPPS
2010
IEEE
14 years 9 months ago
Dynamic load balancing on single- and multi-GPU systems
The computational power provided by many-core graphics processing units (GPUs) has been exploited in many applications. The programming techniques currently employed on these GPUs...
Long Chen, Oreste Villa, Sriram Krishnamoorthy, Gu...